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Bio::Index::SwissprotBio::Index::Swissprot is a Perl Interface for indexing (multiple) Swissprot .dat files (ie flat file swissprot format).

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Perl module |interface |perl |Perl interface |swissprot format |  
Bio::DB::Flat::BDB::swissprotBio::DB::Flat::BDB::swissprot is a swissprot adaptor for Open-bio standard BDB-indexed flat file.

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Perl module |adaptor |swissprot adaptor |BDB-indexed flat file |  

swissprotin tags

Bio::DB::Flat::BDB::swissprotBio::DB::Flat::BDB::swissprot is a swissprot adaptor for Open-bio standard BDB-indexed flat file.

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Perl module |adaptor |swissprot adaptor |BDB-indexed flat file |  

swissprotin description

Bio::Index::SwissprotBio::Index::swissprot is a Perl Interface for indexing (multiple) Swissprot .dat files (ie flat file swissprot format). Bio::Index::Swissprot is a Perl Interface for indexing (multiple) Swissprot .da...

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Perl module |interface |perl |Perl interface |swissprot format |  
Bio::DB::Flat::BDB::swissprotBio::DB::Flat::BDB::swissprot is a swissprot adaptor for Open-bio standard BDB-indexed flat file. Bio::DB::Flat::BDB::swissprot is a swissprot adaptor for Open-bio standard BDB-indexed flat file.SYNO...

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Perl module |adaptor |swissprot adaptor |BDB-indexed flat file |  
Bio::Network::IO::dip_tabThe tab-separated columns are: edge DIP id node A DIP id node A optional id node A swissprot id node A PIR id node A GenBank GI id node B DIP id node B optional id node B SwissProt id node B PIR id no...

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Perl module |parser |parse interaction data |  
"sprot.dict");mkcwdict($input_file, $output_dictfile, $prebuilt_dictfile)This function creates the common word diction...">Bio::ExtractNE::MakeDictCurrently, only swissprot data is supported. mkdict({ sprot_file => "sprot", } => "sprot.dict");mkcwdict($input_file, $output_dictfile, $prebuilt_dictfile)This function creates the common word diction...

"sprot.dict");mkcwdict($input_file, $output_dictfile, $prebuilt_dictfile)This function creates the common word diction...">Download now
Perl module |create |dictionary |create dictionary |  
Bio::LiveSeq::Translationusually created out of a swissprot database entry crossreferenced from an EMBL CDS feature. Returns : an array Args : none Requirements: · Perl

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Perl module |perl |translation |translation class |  
Bio::DB::SeqFeature::Store::bdb· Bio::Seq::RichSeq is all of the above plus it has slots for extra information specific to GenBank/EMBL/swissprot files.· Bio::Seq::LargeSeq is for sequences which are too big for fitting i...

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database |Perl module |perl |store objects |BerkeleyDB |  
Bio::AnnotationCollectionISwissprot.However, you as a user and us collectively as a community can grow the "standard" tag mapping over time and specifically for a particular area.What's New in This Release:· Perl

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Perl module |interface |perl |Perl interface |  
Asgardthis database is ideally derived from swissprot; for general BLAST only, any database will do); * [Next two options not needed for -B mode] -f File with FASTA sequences corresponding to the BLAST data...

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metabolic pathway |pathway reconstruction |  
Bio::Seq::SequenceTraceThe id is equivalent to the ID field of the GenBank/EMBL databanks and the id field of the swissprot/sptrembl database. In fasta format, the >(S+) is presumed to be the id, though some people overload...

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Perl module |object |sequence |bioperl |Bioperl object |  

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